Ph.D. University of Paris 7 - Denis Diderot
Department of Organismic and Evolutionary Biology
email: cchapus (at) oeb.harvard.edu
1995-1997 : Degree in Chemistry and Physics : University of Paris 11 - Orsay
2001 : Master Degree in BioInformatics at the University of Paris 7 - Denis Diderot
With my multi-field background, I like to bring together different fields. I'm a computionnal biologist with a strong informatic background. My principal interest is comparing species using the huge amount of molecular data that are available.
In the Scott Edwards' lab, I have developped some scripts to asset bioinformatics questions from my co-workers. My scripts are written in Python and some of them can be downloaded on this page.
Most of the concerns of my co-workers were about PHASE. I have developed some scripts that allows formatting of PHYLIP or NEXUS to a PHASE-friendly format. I have also written a script to translate the output of PHASE in Nexus. My scripts are written in Python and are so multi-plateform
Phylip2Phase.py phylip_file outfile
Nexus2Phase.py nexus_file outfile
Phase2Nexus.py output_from_phase outfile_nexus <optionnal_allelle_table>