1998.
Giribet, G. & C. Ribera. The position of Arthropods in the Animal
Kingdom: a search for a reliable outgroup for internal Arthropod phylogeny.
Molecular Phylogenetics and Evolution 9(3): 481-488.
1999.
Giribet, G., S. Carranza, M. Riutort, J. Baguñà & C. Ribera. Internal
phylogeny of the Chilopoda (Myriapoda, Arthropoda) using complete
18S rDNA and partial 28S rDNA sequences. Philosophical Transactions
of the Royal Society of London, series B 354: 215-222.

1999.
Giribet, G. & S. Carranza. Point counter point. What can 18S rDNA
do for Bivalve phylogeny? Journal of Molecular Evolution 48(3): 256-258.

1999.
Giribet, G. & W.C. Wheeler. On gaps. Molecular Phylogenetics and Evolution
13(1): 132-143.

1999.
Giribet, G. & W.C. Wheeler. The position of Arthropods in the Animal
Kingdom... Ecdysozoa, islands, trees and the 'parsimony ratchet'.
Molecular Phylogenetics and Evolution 13(3): 619-623.

1999.
Edgecombe, G.D., G. Giribet & W.C. Wheeler. Phylogeny of Chilopoda:
Analysis of 18S and 28S rDNA sequences and morphology. In: Evolución
y filogenia de Arthropoda (A. Melic et al., ed.). Boletín S.E.A. 26:
293-331.

1999.
Giribet, G., M. Rambla, S. Carranza, M. Riutort, J. Baguñà
& C. Ribera. Phylogeny of the arachnid order Opiliones (Arthropoda)
inferred from a combined approach of complete 18S, partial 28S ribosomal
DNA sequences and morphology. Molecular Phylogenetics and Evolution
11(2): 296-307.
2000.
Giribet, G., D.L. Distel, M. Polz, W. Sterrer & W.C. Wheeler.
Triploblastic relationships with emphasis on the acoelomates, and
the position of Gnathostomulida, Cycliophora, Plathelminthes and Chaetognatha;
a combined approach of 18S rDNA sequences and morphology. Systematic
Biology 49 539-562.

2001. Giribet, G., G.D. Edgecombe & W.C. Wheeler. Arthropod phylogeny based on eight molecular loci and morphology. Nature 413: 157-161.

2002. Edgecombe, G.D., G. Giribet & W.C. Wheeler. Phylogeny of Henicopidae (Chilopoda: Lithobiomorpha): a combined analysis of morphology and five molecular loci. Systematic Entomology 27: 31-64.

2002. Giribet, G., G.D. Edgecombe, W.C. Wheeler, & C. Babbitt. Phylogeny of the Arachnida and Opiliones: a combined approach using morphological and molecular sequence data. Cladistics 18: 5-70.

2002.
Giribet, G. & W.C. Wheeler. On bivalve phylogeny: a high-level analysis
of the Bivalvia (Mollusca) based on combined morphology and DNA sequence
data. Invertebrate Biology 121: 271-324.

2003. Maxmen, A. B., B.F. King, E.B. Cutler & G. Giribet. Evolutionary relationships within the protostome phylum Sipuncula; A molecular analysis of ribosomal genes and histone H3 sequence data. Molecular Phylogenetics and Evolution 27: 489-503.
2003. Okusu, A., E. Schwabe, D. J. Eernisse & G. Giribet. Towards a phylogeny of chitons (Mollusca, Polyplacophora) based on combined analysis of five molecular loci. Organisms Diversity & Evolution 3: 281-302.
2005. Schulze, A., E.B. Cutler & G. Giribet. Reconstructing the phylogeny of the Sipuncula. Hydrobiologia 535/536: 277-296.