Kerney, R., B.K. Hall and J. Hanken. 2009. Regulatory elements of Xenopus col2a1 drive cartilaginous gene expression in transgenic frogs. Int. J. Dev. Biol. In press.
Wu, Y., S. M. Rovito, T.J. Papenfuss, and J. Hanken. 2009. A new species of the genus Paramesotriton (Caudata: Salamandridae) from Guangxi Zhuang Autonomous Region, southern China. Zootaxa. 2060: 59–68. PDF
Meegaskumbara, M., R. Pethiyagoda, J. Chanson, D. Wake, and J. Hanken. 2008. Pickled frogs help biodiversity assessment. In Threatened Amphibians of the World (S. Stuart, M. Hoffmann, J. Chanson, N. Cox, R. Berridge, P. Ramani, and B. Young, eds.), p. 45. Lynx Edicions, Barcelona, Spain; IUCN, Gland, Switzerland; and Conservation International, Arlington, Virginia, USA.
Gross, J. B. and J. Hanken. 2008. Segmentation of the vertebrate skull: neural-crest derivation of adult cartilages in the clawed frog, Xenopous laevis. Integrative and Comparative Biology. 48(5): 681-696. PDF
Zimmermann, J., M. Hajibabaei, D. Blackburn, J. Hanken, E. Cantin, J. Posfai, and T. Evans, Jr. 2008. DNA damage in preserved specimens and tissue samples: A molecular assessment. Front. Zool. 5: 5–18. PDF
Blackburn, D. C., J. Hanken and and F. A. Jenkins, Jr. 2008. Concealed weapons: erectile claws in African frogs. Biol. Lett. 4: 355–357. PDF
Kerney, R. and J. Hanken. 2008. Gene expression reveals unique skeletal patterning in the limb of the direct-developing frog, Eleutherodactylus coqui (Anura: Leptodactylidae). Evol. Dev. 10: 439–448. PDF
Gross, J. B. and J. Hanken. 2008. Review of fate-mapping studies of osteogenic cranial neural crest in vertebrates. Dev. Biol. 317: 389–400. PDF
Bininda-Emonds, O. R. P., J. E Jeffery, M. R. Sanchez-Villagra, J. Hanken, M. W. Colbert, C. Pieau, L. Selwood, C. J. ten Cate, A. Raynaud, C. K. Osabutey, and M. K. Richardson. 2007. Forelimb-hindlimb developmental timing differences across tetrapod phylogeny. BMC Evolutionary Biology 2007, 7:182. PDF
Wake, D. B., J. M. Savage, and J. Hanken. 2007. Montane salamanders from the Costa Rica-Panamá border region, with descriptions of two new species of Bolitoglossa. Copeia 2007: 556–565. PDF
Kerney, R. R., M. Meegaskumbura, K. Manamendra-Arachchi and J. Hanken. 2007. Cranial ontogeny in Philautus silus (Anura: Ranidae: Rhacophorinae) reveals few similarities with other direct-developing anurans. J. Morphol. 268: 715–725. PDF
Kerney, R., J. Gross, and J. Hanken. 2007. Runx2 is essential for larval hyobranchial cartilage formation in Xenopus laevis. Devel. Dynam. 236: 1650–1662. PDF
Parra, G., R. Brown, J. Hanken, B. Hedges, R. Heyer, S. Kuzmin, E. Lavilla, S. Lötters, B. Pimenta, S. Richards, M. O. Rödel, R. O. de Sá, and D. B. Wake. 2007. Systematics and conservation. In Amphibian Conservation Action Plan (C. Gascon, J. P. Collins, R. D. Moore, D. R. Church, J. E. McKay, and J. R. Mendelson III, eds.), pp. 45-48. IUCN/SSC Amphibian Specialist Group, Gland, Switzerland, and Cambridge, UK. PDF
Gross, J. B., J. Hanken, E. Oglesby, and N. Marsh-Armstrong. 2006. Use of a ROSA26:GFP transgenic line for long-term Xenopus fate-mapping studies. J. Anat. 209: 401–413. PDF
Hanken, J., and J. B. Gross. 2005. Evolution of cranial development and the role of neural crest: insights from amphibians. J. Anat. 207: 437–446. PDF
Parra-Olea, G., M. García-París, J. Hanken, and D. B. Wake. 2005. Two new species of Pseudoeurycea (Claudata: Plethodontidae) from the mountains of northern Oaxaca, Mexico. Copeia 2005: 461-469. PDF
Hanken, J., D. B. Wake, and J. M. Savage. 2005. A solution to the large black salamander problem (genus Bolitoglossa) in Costa Rica and Panamá. Copeia 2005: 227–245. PDF
Wake, D. B., J. Hanken, and R. Ibáñez. 2005. A new species of big black Bolitoglossa (Amphibia: Caudata) from Central Panamá. Copeia 2005: 223–226. PDF
Gross, J. B., and J. Hanken. 2005. Cranial neural crest contributes to the bony skull vault in adult Xenopus laevis: insights from cell labeling studies. J. Exp. Zool. (Mol. Dev. Evol.). 304B: 169-176. PDF
Gross, J. B., and J. Hanken. 2004. Use of fluorescent dextran conjugates as a long-term marker of osteogenic neural crest in frogs. Devel. Dynam. 230: 100-106. PDF
Parra-Olea, G., M. García-París, J. Hanken, and D. B. Wake. 2004. A new species of arboreal salamander (Caudata: Plethodontidae: Pseudoeurycea) from the mountains of Oaxaca, México. J. Nat. Hist. 38 (16): 2119-2131. PDF
Shapiro, M. D., J. Hanken, and N. Rosenthal. 2003. Developmental basis of evolutionary digit loss in the Australian lizard Hemiergis. J. Exp. Zool. (Mol. Dev. Evol.) J. Exp. Zool. (Mol. Dev. Evol.) 297B: 48–56. PDF
Hanken, J. 2003. Direct development. In Keywords & Concepts in Evolutionary Developmental Biology (B. K. Hall and W. M. Olson, eds.), pp. 97 102. Harvard University Press, Cambridge, Ma.
Falck P., J. Hanken, and L. Olsson. 2002. Cranial neural crest emergence and migration in the Mexican axolotl (Ambystoma mexicanum). Zoology (Jena) 105: 195-202. PDF
Olsson, L., J. D. Moury, T. F. Carl, O. Håstad, and J. Hanken. 2002. Cranial neural crest-cell migration in the direct-developing frog, Eleutherodactylus coqui: molecular heterogeneity within and among migratory streams. Zoology (Jena) 105: 3-13. PDF
Hanken, J. 2002. Eric Thomas Brazil Francis and the evolutionary morphology of salamanders. Introduction to the reprint of E. T. B. Francis, The Anatomy of the Salamander, pp. v-xiv. Society for the Study of Amphibians and Reptiles, Ithaca, New York.
Hanken, J., T. F. Carl, M. K. Richardson, L. Olsson, G. Schlosser, C. K. Osabutey, and M. W. Klymkowsky. 2001. Limb development in a "non-model" vertebrate, the direct-developing frog Eleutherodactylus coqui. J. Exp. Zool. (Mol. Dev. Evol.) 291: 375-388. PDF
Hanken, J., and D. B. Wake. 2001. A seventh species of minute salamander (Thorius: Plethodontidae) from the Sierra de Juárez, Oaxaca, México. Herpetologica 57: 515-523. PDF
Olsson, L., P. Falck, K. Lopez, J. Cobb, and J. Hanken. 2001. Cranial neural crest cells contribute to connective tissue in cranial muscles in the anuran amphibian, Bombina orientalis. Devel. Biol. 237: 354-367. PDF
Brame, A. H., Jr., II, J. M. Savage, D. B. Wake, and J. Hanken. 2001. New species of large black salamander, genus Bolitoglossa (Plethodontidae) from western Panamá. Copeia 2001: 700-704. PDF
Carl, T. F., C. Dufton, Y. Vourgourakis, M. Klymkowsky, and J. Hanken. 2000. Green fluorescent protein used to assess cranial neural crest derivatives in the frog, Xenopus laevis. In Regulatory Processes in Development: The Legacy of Sven Hörstadius (1898-1996) (C.-O. Jacobson and L. Olsson, eds.), pp. 167-172. Wenner-Gren International Series, volume 76, Portland Press, London.
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