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Journal Articles - 2005   PDF Blumenstiel, J. P., and D. L. Hartl. 2005. Evidence for maternally transmitted small interfering RNA in the repression of transposition in Drosophila virilis. Proc. Natl. Acad. Sci. USA 102:15965-15970.       Landry, C. R., P. J. Wittkopp, C. H. Taubes, J. M. Ranz, A. G. Clark, and D. L. Hartl. 2005. Compensatory cis-trans evolution and the dysregulation of gene expression in interspecific hybrids of Drosophila. Genetics 171:1813-1822.       Zilversmit, M., and D. L. Hartl. 2005. Evolutionary history and population genetics of human malaria parasites. Pp. 95-109 in Molecular Approaches to Malaria, Eds. I. W. Sherman. American Society for Microbiology Press, Washington, D.C.     PDF Silander, O., D. M. Weinreich, K. Wright, K. O'Keefe, C. Rang, P. Turner, and L. Chao 2005. Widespread genetic exchange among terrestrial bacteriophages. PNAS 102:19009-19014.     PDF Weinreich, D. M. 2005. The rank ordering of genotypic fitness values predicts genetic constraint on natural selection on landscapes lacking sign epistasis. Genetics 171:1397-1405.     PDF DePristo, M. A., D. M. Weinreich, and D. L. Hartl. 2005. Missense meanderings in sequence space: a biophysical view of protein evolution. Nature Rev. Genet. 6: 678-687.     PDF Weinreich, D. M., R. Watson, and L. Chao 2005. Perspectives: Sign epistasis and constraint on evolutionary trajectories. Evolution 59:1165-1174.     PDF Weinreich, D. M., and L. Chao 2005. Rapid evolutionary escape in large populations from local peaks on the Wrightian fitness landscape. Evolution 59:1175-1182.     PDF Neafsey, D. E., D. L. Hartl, and M. Berriman. 2005. Evolution of noncoding and silent coding sites in the Plasmodium falciparum and Plasmodium reichenowi genomes. Mol. Biol. Evol. 22: 1621-1626.     PDF Neafsey, D. E., and D. L. Hartl. 2005. Convergent loss of an anciently duplicated, functionally divergent RH2 opsin gene in the fugu and Tetraodon lineages. Gene 350: 161-171.     PDF Lemos, B., B. R. Bettencourt, C. D. Meiklejohn, and D. L. Hartl. 2005. Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions. Mol. Biol. Evol. 22: 1345-1354.     PDF Lemos, B., C. D. Meiklejohn, M. Caceres, and D. L. Hartl. 2005. Rates of divergence in gene expression profiles of primates, mice, and flies: stabilizing selection and variability among functional categories. Evolution 59: 126-137.     PDF Kulathinal, R. J., and D. L. Hartl. 2005. The latest buzz in comparative genomics. Genome Biol. 6: 201.