Evolution of gene expression

In evolutionary biology, it remains a key challenge to learn how variation in genotype within populations of organisms is ultimately associated with adaptive variation in phenotype. Several new molecular and genomic approaches offer promising opportunities to meet this challenge. Among these are DNA microarrays that enable expression profiling (genome-wide analysis of the relative abundances of gene transcripts). In principle, this approach can form a bridge connecting genotype with phenotype, because specific, reproducible patterns of transcription associated with particular genotypes may also be associated with particular phenotypes and affect fitness. Application of expression profiling to natural populations to study the evolution of whole genomes is still in its earliest stages. In our laboratory, we have focused our genomic efforts on the model organisms, yeast and Drosophila.

Previously we provided evidence that sexual selection and sexual differentiation are important in driving the evolution of gene expression networks. Among genes that have evolved differences in expression between two Drosophila species that diverged 2.5 million years ago, more than 80% of the differences occur either in one sex only or else involve the gain, loss or reversal of sex-biased expression.

 

Selected publications:

PDF Brown, K. M., C. R. Landry, D. L. Hartl, and D. Cavalieri. 2008. Cascading transcriptional effects of a naturally occurring frameshift mutation in Saccharomyces cerevisiae. Mol. Ecol. 17: 2985-2997.  
 
PDF Landry, C. R., B. Lemos, S. A. Rifkin, W. J. Dickinson, and D. L. Hartl. 2007. Genetic properties influencing the evolvability of gene expression. Science 317:118-121.  
 
PDF Landry, C. R., J. Oh, D. L. Hartl, and D. Cavalieri. 2006. Genome-wide scan reveals that genetic variation for transcriptional plasticity in yeast is biased towards multi-copy and dispensable genes. Gene 366:343-351.  
 
PDF Lemos, B., C. D. Meiklejohn, M. Caceres, and D. L. Hartl. 2005. Rates of divergence in gene expression profiles of primates, mice, and flies: stabilizing selection and variability among functional categories. Evolution 59: 126-137.  
 
PDF Lemos, B., C. D. Meiklejohn, and D. L. Hartl. 2004. Regulatory evolution across the protein interaction network. Nat. Genet. 36: 1059-1060.  
 
PDF Ranz, J. M., C. I. Castillo-Davis, C. D. Meiklejohn, and D. L. Hartl, 2003 Sex-dependent gene expression and evolution of the Drosophila transcriptome. Science 300: 1742-1745.