S. Kalisz and E. M. Kramer. (2008). Phenotypic variation and genetic constraint. Heredity 100:171-177.
S. A. Hodges and E. M. Kramer. (2007) Quick Guide: Columbines. Current Biology, 17:R992-R994.
E. M. Kramer. (2007). Understanding the genetic basis of floral diversity. BioScience 57:479-487.
Gould, B. and E. M. Kramer. (2007) Virus-induced gene silencing as a tool for functional analyses in the emerging model plant Aquilegia (columbine, Ranunculaceae). Plant Methods, 3:6.
M. A. Jaramillo and E. M. Kramer. (2007) The role of developmental genetics in understanding homology and morphological evolution in plants. International Journal of Plant Science, 168:61-72.
Kramer, E. M., L. Holappa, B. Gould, M. A. Jaramillo, D. Setnikov, and P. Santiago. (2007) Elaboration of B gene function to include the identity of novel floral organs in the lower eudicot Aquilegia (Ranunculaceae). Plant Cell, 19:750-766.
Jaramillo, M. J. and E. M. Kramer. (2007) Molecular evolution of the petal and stamen identity genes APETALA3 and PISTILLATA after petal loss in the Piperales. Molecular Phylogenetics and Evolution, , 44:598-609.
E. M. Kramer and K. Donohue. (2006) Perspective: Traversing the adaptive landscape in Snapdragons. Science, 313:924-925.
E. M. Kramer, H.-J. Su, C.-C. Wu, J.-M.Hu. (2006) A simplified explanation for the frameshift mutation that created a novel C-terminal motif in the APETALA3 gene lineage. BMC Evolutionary Biology, 6:30.
E. M. Kramer and E. A. Zimmer. (2006) Gene duplication and floral developmental genetics of basal eudicots. Pp. 352-381 in P. Soltis, D. Soltis, J. Leebens-Mack, ed. Advances in Botanical Research, vol. 44.
Hall, J. H., T. E. Tisdale, K. Donohue and E. M. Kramer. (2006) Developmental basis of an anatomical novelty: heteroarthrocarpy in Cakile lanceolata and Erucaria erucarioides (Brassicaceae). International Journal of Plant Science, 167:771-789.
E. M. Kramer. (2006) Floral patterning and control of floral organ formation. Pp. 49-70 in C. Ainsworth, ed. Flowering and its Manipulation. Annual Plant Reviews, vol. 23.
E. M. Kramer. (2005) Methods for studying evolution of plant reproductive structures: Comparative gene expression. Methods in Enzymology, 395B:617-635.
Di Stilio, V. S., E. M. Kramer and D. A. Baum. (2005) Floral MADS box genes and homeotic gender dimorphism in Thalictrum dioicum (Ranunculaceae) - a new model for the study of dioecy. Plant Journal, 41:755-766.
E. M. Kramer and M. A. Jaramillo. (2005) The genetic basis for innovations in floral organ identity. Journal of Experimental Zoology (Molecular and Developmental Evolution), 304B:526-535.
E. M. Kramer. (2005) Floral architecture: Regulation and diversity of floral shape and pattern. Pp. 121-148 in C. G. N. Turnbull, ed. Plant Architecture and its Manipulation. Annual Plant Reviews, vol. 17.
E. M. Kramer and J. Hall. (2005) The evolutionary dynamics of genes controlling floral development. Current Opinion in Plant Biology, 8:1-6.
Jaramillo, M. A. and E. M. Kramer. (2004) APETALA3 and PISTILLATA homologs exhibit novel expression patterns in the unique perianth of Aristolochia (Aristolochiaceae). Evolution and Development, 6:449-458.
Stellari, G. M., M. A. Jaramillo and E. M. Kramer. (2004) Evolution of the APETALA3 and PISTILLATA gene lineages of MADS-box containing genes in the basal angiosperms. Molecular Biology and Evolution, 21:506-519.
Kramer, E. M., M. A. Jaramillo and V. S. Di Stilio. (2004) Patterns of gene duplication and functional evolution during the diversification of the AGAMOUS subfamily of MADS box genes in angiosperms. Genetics, 166:1011-1023.
Hileman, L., E. M. Kramer, and D. Baum. (2003) Differential regulation of symmetry genes and the evolution of floral morphologies. Proceedings of the National Academy of Science, USA, 100:12814-12819.
Kramer, E. M., V. S. Di Stilio and P. Schlüter. (2003) Complex patterns of gene duplication in the APETALA3 and PISTILLATA lineages of the Ranunculaceae. International Journal of Plant Sciences, 164:1-11.
Baum, D. A., J. Doebley, V. F. Irish and E. M. Kramer. (2002) Response: Missing links: the genetic architecture of flower and floral diversification. Trends in Plant Science, 7: 31-34.
Kramer, E. M. and V. F. Irish. (2000) Evolution of the petal and stamen developmental programs: evidence from comparative studies of the basal angiosperms. International Journal of Plant Science, 161: S29-S40.
Kramer, E. M. and V. F. Irish. (1999) Evolution of genetic mechanisms controlling petal development. Nature 399: 144-148.
Kramer, E. M., R. L. Dorit, and V. F. Irish (1998) Molecular evolution of genes controlling petal and stamen development: Duplication and divergence within the APETALA3 and PISTILLATA MADS-box gene lineages. Genetics 149: 765-783.
Irish, V. F., and E. M. Kramer (1998) Genetic and molecular analysis of angiosperm flower development. Advances in Botanical Research 28:197-230.